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How Data Scientists Work Together With Domain Experts in Scientific Collaborations: To Find The Right Answer Or To Ask The Right Question?
Yaoli Mao, Dakuo Wang, Michael Muller, Kush R. Varshney, Ioana Baldini, Casey Dugan, AleksandraMojsilović
TL;DR
Data scientists and biomedical experts increasingly collaborate on complex scientific questions, but those collaborations face challenges. This interview study analyzes such work using the Olson framework and reports that content and process common ground develop differently, alongside challenges in data communication and question translation.
Problem
The paper examines challenges in data-centric open-science collaborations between data scientists and biomedical scientists across the Olson framework’s four dimensions.
Source: §1 · p. 3Method
The authors interviewed 22 collaborators and coded transcripts using the Olson framework’s dimensions alongside inductive thematic analysis.
Source: §1 · p. 3, §3.3 · p. 7Results
The study reports that biomedical collaborations require breaking content common ground while accumulating process common ground, alongside challenges communicating data structures and translating biomedical questions into analyzable ones.
Source: §4.4.3 · p. 14, §4.4.4 · p. 14, §7 · p. 19Takeaways & Limitations
The authors distinguish content from process common ground as a finer-grained way to understand practices in scientific collaborations.
Source: §7 · p. 19Snowball sampling may introduce selection bias, informants were all U.S.-based, and interview self-reports may be subjective, single-sided, and oversimplified.
Source: §6 · p. 19
Abstract
from arXiv · showhide
In recent years there has been an increasing trend in which data scientists and domain experts work together to tackle complex scientific questions. However, such collaborations often face challenges. In this paper, we aim to decipher this collaboration complexity through a semi-structured interview study with 22 interviewees from teams of bio-medical scientists collaborating with data scientists. In the analysis, we adopt the Olsons' four-dimensions framework proposed in Distance Matters to code interview transcripts. Our findings suggest that besides the glitches in the collaboration readiness, technology readiness, and coupling of work dimensions, the tensions that exist in the common ground building process influence the collaboration outcomes, and then persist in the actual collaboration process. In contrast to prior works' general account of building a high level of common ground, the breakdowns of content common ground together with the strengthen of process common ground in this process is more beneficial for scientific discovery. We discuss why that is and what the design suggestions are, and conclude the paper with future directions and limitations.
1 INTRODUCTION
Large, complex scientific datasets exceed the analytic capacity of single-discipline teams, while data-centric open-science collaborations also encounter tensions. This study uses biomedical collaborations to examine those challenges through the Olson framework’s four dimensions.
1 INTRODUCTION
- Large, complex scientific datasets exceed the analytic capability of a local team working within a single expertise domain.The paper connects this need for new research practices to open science’s advocacy for transparency, accessibility, reproducibility, and interdisciplinary collaboration.Source: §1 · p. 2
- Interdisciplinary collaborations have produced successes such as AlphaFold, but those examples coexist with reported collaboration tensions and challenges.Source: §1 · p. 2
- Data-centric collaborations face tensions linked to interdisciplinary work, differing motivations and cultures, remote teams, data-centric practices, and limited technology or infrastructure support.The paper also notes tensions between domain experts’ and data volunteers’ expectations in a civic data hackathon.Source: §1 · p. 2
- Biomedical research is an active open-science domain because projects often curate and integrate large datasets, while analytic or interpretive mistakes may have catastrophic consequences for human lives.Source: §1 · p. 2
- The study asks what challenges data scientists and biomedical scientists encounter across common ground, coupling of work, collaboration readiness, and technology readiness.The authors use semi-structured interviews with 22 participants and apply the Olson framework as an analytic lens, not as a framework to test.Source: §1 · p. 3
2 RELATED WORK
The related work establishes collaboration frameworks and theories for understanding distributed and interdisciplinary work, then identifies gaps in applying them to data-centric open science. The paper extends this work by examining small and large biomedical collaborations, including how content and process common ground differ.
2.1 The Olsons’ Framework and Remote Scientific Collaborations
- The Olson framework describes coupling of work, common ground, collaboration readiness, and technology readiness; this study applies it to interdisciplinary open-science projects and examines possible mismatches with its high-common-ground best practices.Source: §2.1 · p. 3
2.2 Teams and Infrastructures in Data-Centric Open Science Projects
- Prior data-centric collaboration research examined selected workflow steps or particular tools, while this paper seeks a comprehensive account spanning both small and large teams.Open-science teams can take varied forms, including geographically distributed and self-organizing communities.Source: §2.2 · pp. 4–5
2.3 Interdisciplinary Collaboration Teams
- Interdisciplinary teams distribute domain knowledge and task understanding across experts, making knowledge sharing and integration important but costly.The literature describes a trade-off between sharing unique perspectives and the costs of pooling, exchanging, and integrating information.Source: §2.3 · p. 5
2.3.1 Third Space and Hybridity.
- Third-space theory describes a hybrid space at disciplinary boundaries where participants can preserve their own perspectives while negotiating and integrating differences.The authors propose that data scientists and biomedical scientists also construct such a space, potentially making existing support techniques relevant.Source: §2.3.1 · pp. 5–6
2.3.2 Common Ground: Content and Process.
- Content common ground concerns shared understanding of the work, whereas process common ground concerns shared and continually updated rules and practices for conducting it.The authors argue that biomedical collaborations distinguish domain content expertise from analytics process expertise, and that the two forms of common ground may develop differently over time.Source: §2.3.2 · p. 6
3 METHODS
The study draws on interviews with 22 experienced participants reporting on 26 biomedical research projects. Interview transcripts were coded deductively with the Olson framework and inductively for themes, with iterative review by two coders.
3.1 Participants
- The study interviewed 22 U.S.-based informants reporting on 26 projects, including data scientists and biomedical scientists across small teams and crowdsourcing collaborations.Participants averaged five years of experience in their expert domains; 16 identified primarily as data scientists and six as biomedical scientists.Source: §3.1 · p. 7
3.2 Semi-structured Interview
- Researchers conducted 19 face-to-face and three remote semi-structured interviews over three months in summer 2017, asking about collaboration experiences and recent projects.They also invited participants to provide project artifacts such as meeting notes, analysis results, and publications.Source: §3.2 · p. 7
3.3 Data Analysis and Verification
- Two coders first used deductive coding for Olson’s dimensions and common-ground subdimensions, then inductively developed themes and axial codes through iterative discussion and cross-checking.They added codes until theoretical saturation and revisited the framework and transcripts to resolve disagreements.Source: §3.3 · p. 7
4 FINDINGS
The findings are organized by the Olson framework’s dimensions, beginning with coupling of work and ending with common ground.
4 FINDINGS
- The findings are organized in this order: coupling of work, collaboration readiness, technology readiness, and common ground.Source: §4 · p. 9
4.1 The Coupling of Work
Across a range of projects, collaborators describe an iterative workflow that translates biomedical questions into data-science tasks and revises them through evaluation. Team structure shapes how that work is coordinated, from close small-team collaboration to managed subteams.
4.1.1 Common Workflow.
- The ideal workflow moves from biomedical data and questions through data-science translation and modeling to evaluation, but is iterative and can revise the research question.Informants also described brainstorming and rapidly testing prototypes together.Source: Figure 1 · p. 9, §4.1.1 · p. 9
- Small-group teams are managed by a team researcher, while large crowdsourcing projects use organizers or project managers to structure and monitor subteams.Source: §4.1.2 · p. 9
4.1.2 Team Structure and Coupling of Work.
- Small teams rely on timely communication for closely coupled work; crowdsourcing managers divide questions into subproblems and regulate coupling through clarification and participant support.Examples include forum feedback, webinars, and expert advisory boards.Source: §4.1.2 · pp. 9–10
4.2 Collaboration Readiness
Collaboration begins with reciprocal skills and resources, but motivation and engagement shift over time. Small teams and large crowdsourcing projects face different pressures, while leaderboard competition can draw effort away from scientific discovery.
4.2 Collaboration Readiness
- Reciprocal skills and resources initially attract collaborators, but motivation changes; small teams can become dependent on a few core members, frustrating them and reducing engagement.Source: §4.2.1 · p. 10
4.2.1 Challenges of Maintaining Motivation.
- Small teams risk management overload, while large crowdsourcing subteams avoid it in the short term but often struggle to sustain motivation beyond short projects and limited publication opportunities.These projects commonly last three to four months, and informants reported difficulty finding collaborators afterward.Source: §4.2.1 · p. 10
4.2.2 Reward Attribution and Over-Competing with Other Teams.
- Leaderboard rankings based on one metric can prioritize higher scores over biomedical meaning or new questions, encouraging repetitive solutions and limiting discovery.Source: §4.2.2 · pp. 10–11
4.3 Technology Readiness
Teams use varied technologies to support shared content and progress, but role-specific needs and tool habits complicate selection. Information can remain fragmented across systems, especially when no manager tracks it.
4.3 Technology Readiness
- Teams use co-editing, communication, co-creation and version-control, data and code repositories, and expertise systems; technology-readiness challenges vary with collaborators’ backgrounds and over time.Source: §4.3 · p. 11
4.3.1 Information Needs and Tool Preferences.
- Biomedical scientists prioritize transparency and interpretability, while data scientists prioritize model performance, generalizability, and efficiency; their distinct needs shape tool preferences.Biomedical scientists wanted documentation of processing and alternatives, while data scientists sought reusable models and examples.Source: §4.3.1 · p. 12
- Teams often choose familiar overlapping tools instead of advanced options because persuasion and training take time; one challenge’s unified-tool requirement coincided with lower participation.Source: §4.3.1 · p. 12
4.3.2 Fragmented Information.
- Information scattered across tools and systems is especially difficult to track and synthesize in small teams without a dedicated management role.Informants described using separate local coding tools, documents, slides, email, and Slack.Source: §4.3.2 · p. 12
4.4 Common Ground
Collaborators often struggle to establish and maintain common ground as biomedical questions are translated into data-science questions and evolve during projects. The findings highlight how opaque data and differing aims can complicate question formulation, evaluation, and interpretation.
4.4.1 Formulating the Initial BMS and DS Research Questions.
- At project outset, small teams often converge on paired biomedical and data-science questions, with each discipline believing it is answering its own version.Biomedical scientists define a domain-specific question that is translated into a computable data-science question.Source: §4.4.1 · pp. 12–13
- Large crowdsourcing projects use expert panels and dry runs to check that proposed questions are meaningful, feasible, and manageable within the available time.Participants reported that planning such collaborations could take months.Source: §4.4.1 · p. 13
4.4.2 New Research Questions Emerge During the Project Process.
- As projects unfold, questions can shift toward better or more impactful directions, but unexpressed changes break common ground and can confuse teams.The shift may move collaborators from answering an initial question toward exploring what question to ask.Source: §4.4.2 · p. 13
4.4.3 Obscure Data.
- Biomedical data’s ambiguity, bias, missing context, and experiential structure knowledge complicate method evaluation and result interpretation, contributing to frustration and distrust.Relevant clinical context may be absent from metadata, while data structures vary in form, jargon, and routine across projects.Source: §4.4.3 · p. 14
4.4.4 Ask The Right Question.
- Biomedical scientists may seek alternative research questions but find the translation into data-science questions opaque, while prediction tasks offer mature methods and standardized loss functions.Informants described alternative hypotheses as important in biomedical research.Source: §4.4.4 · p. 14
- Biomedical scientists seek meaningful, intervention-relevant discovery, while data scientists may prioritize novel methods, predictive performance, and standardized evaluation.Biomedical problems often lack clear predictive outcomes, and this prediction-oriented tendency appears more severe in small teams.Source: §4.4.4 · p. 15
- In large crowdsourcing collaborations, an ensemble of winning teams’ models can aggregate different approaches’ focuses and merits to support new insight.Source: §4.4.4 · p. 15
5 DISCUSSION
The discussion identifies evolving common ground—especially the interplay between changing research questions and accumulating collaboration procedures—as a central challenge in data-centric scientific collaboration. It relates this challenge to work organization, team readiness, and tools, and proposes technical, organizational, and AI-partner directions.
5.1 Successful Collaborations In Scientific Discovery
- Small teams need timely coordination, while large crowdsourcing projects need loose coupling; tight coupling under proper management can also strengthen common ground and collaboration readiness.Many projects were non-divisible and highly iterative, making modular work and routine coordination across locations difficult.Source: §5.1.1 · p. 15
5.1.1 Coupling of Work, Collaboration Readiness, and Technology Readiness.
- Different research agendas can make data scientists’ methods and performance priorities misalign with biomedical scientists’ interest in interpretable, intervention-relevant results.The discussion recommends weighing both sides’ interests in team organization and notes that a broker can translate stakeholders’ goals; it expects this role to smooth collaboration.Source: §5.1.1 · p. 16
- A shared “third space” lets biomedical and data scientists develop hybrid language, negotiate shared tools, and revise the initial problem as new questions emerge.Collaboration readiness also involves organizational dependencies and relationships between teams over time, while tool choices often favor familiar options and interoperability matters as needs evolve.Source: §5.1.1 · pp. 15–16, §5.1.2 · p. 16
5.1.2 Ever-Evolving Common Ground and Better Scientific Discovery.
- Scientific discovery teams benefit from continually revising content common ground while building process common ground, rather than settling on one question or solution.Increasing process common ground can support breaking and updating content common ground; without it, teams may become confused or settle prematurely on less optimal questions or solutions.Source: §5.1.2 · pp. 16–17
5.2 Principles for Technology Design
- The discussion proposes tools that support divergent-to-convergent communication and distinguish evolving content knowledge from process protocols and their histories.A shared team view can coexist with role-specific details; suggested supports include brainstorming, summarizing, evaluating ideas, and tracking changes in shared objects.Source: §5.2 · p. 17
5.3 Project Management Guideline
- For small teams, management training, shared vocabulary and data documentation, and interoperable project-management tools may complement technical solutions.The discussion links these suggestions to difficulties managing fragmented, repetitive information and maintaining collaboration readiness without a specialized project manager.Source: §5.3 · p. 18
5.4 AI as a Partner in the Future of Data-Centric Scientific Discovery
- The discussion suggests AutoML could partner with human teams by helping biomedical scientists explore ways to formulate questions, while noting that technical and non-technical challenges remain.The study describes gaps in translating biomedical questions into data-science questions and interpreting results, alongside a need for iterative data-science attempts to inspire inquiry.Source: §5.4 · p. 18
6 LIMITATIONS
The study’s evidence is bounded by its sampling, interview method, and biomedical focus.
- Snowball sampling may introduce selection bias because informants reached through the researchers’ social network may be unusually active in open science and report more positive experiences.All informants were U.S.-based, which may not represent cultural differences or varied geographical distances in open science collaborations.Source: §6 · p. 19
- Interview self-reports are subjective, single-sided, and potentially oversimplified, limiting detail about dynamic interdisciplinary interactions.The authors call for measures of content and process common ground, observation of real team interactions, and longitudinal case studies across the research pipeline.Source: §6 · p. 19
- Because the study focuses on biomedical research, it remains unknown how collaboration challenges vary in domains such as physics, geology, and psychology.Source: §6 · p. 19
7 CONCLUSION
The study uses interviews to describe data scientists’ and biomedical scientists’ collaboration practices and distinguish two forms of common ground. It concludes that scientific collaboration involves revising content common ground while accumulating process common ground.
- The study reports collaboration challenges from interviews with 22 data scientists and biomedical scientists and offers a systematic account of stakeholder practices.Source: §7 · p. 19
- It distinguishes content common ground from process common ground and finds scientific collaborations require breaking the former while accumulating the latter.The conclusion contrasts this pattern with decision-making or problem-solving scenarios where one decision or solution is the final product.Source: §7 · p. 19
- The authors say the findings inform practices for interdisciplinary collaboration and offer actionable design suggestions for data-analytic tools and cloud-sharing platforms.Source: §7 · p. 19