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TransClaw U-Net: Claw U-Net with Transformers for Medical Image Segmentation
Yao Chang, Hu Menghan, Zhai Guangtao, Zhang Xiao-Ping
TL;DR
CNN-based medical segmentation can struggle to capture long-range spatial features. TransClaw U-Net combines convolutional encoding with transformer patch encoding and retained bottom upsampling, and it achieves the best reported Synapse results among the compared models. The paper also notes that some performance-improving design choices require more computing resources.
Problem
Convolution-based segmentation may fail to model long-range image dependencies, which the paper identifies as a challenge for accurate medical segmentation.
Source: §1 · p. 1Method
TransClaw U-Net combines convolutional feature extraction and transformer patch encoding with self-attention, while retaining bottom upsampling in the decoder.
Source: §1 · p. 2Results
On Synapse, TransClaw U-Net ranked best, with DSC 78.09% and HD 26.38%, improving DSC by 0.6% and HD by 5.3% over TransUNet.
Source: §4.3 · p. 5Takeaways & Limitations
The reported segmentation improvement includes better organ-boundary results, especially between organs occupying small areas.
Source: §4.3 · p. 5Larger inputs, smaller patches, and more skip-connections can improve performance but require more computing resources.
Source: §1 · p. 2
Abstract
from arXiv · showhide
In recent years, computer-aided diagnosis has become an increasingly popular topic. Methods based on convolutional neural networks have achieved good performance in medical image segmentation and classification. Due to the limitations of the convolution operation, the long-term spatial features are often not accurately obtained. Hence, we propose a TransClaw U-Net network structure, which combines the convolution operation with the transformer operation in the encoding part. The convolution part is applied for extracting the shallow spatial features to facilitate the recovery of the image resolution after upsampling. The transformer part is used to encode the patches, and the self-attention mechanism is used to obtain global information between sequences. The decoding part retains the bottom upsampling structure for better detail segmentation performance. The experimental results on Synapse Multi-organ Segmentation Datasets show that the performance of TransClaw U-Net is better than other network structures. The ablation experiments also prove the generalization performance of TransClaw U-Net.
1. INTRODUCTION
The introduction identifies limited long-range feature modeling as a challenge for convolution-based medical image segmentation. TransClaw U-Net combines Claw U-Net detail handling with transformer-based global feature learning and reports more accurate organ segmentation, while noting added resource demands for some design choices.
- CNN-based methods and U-Net variants have achieved strong medical-image segmentation results, and accurate segmentation is important for clinical diagnosis [1–12].The introduction names organ, lesion, and cardiac segmentation among the application areas.Source: §1 · p. 1
- CNN operations focus on local features and may miss long-range dependencies, limiting accurate segmentation in some image regions [13].The introduction also says cited alternatives such as self-attention, atrous convolution, and image pyramids do not address long-range dependencies in medical images.Source: §1 · p. 1
- Transformers model long-term sequence features, and prior work has applied them to vision and medical segmentation, including within U-Net encoders [13] [19] [21] [22].The cited approaches include patch encoding and a pure-transformer U-Net-like architecture.Source: §1 · pp. 1–2
- TransClaw U-Net combines Claw U-Net’s detail segmentation with transformer feature learning; its Synapse experiments report more accurate organ segmentation, while larger inputs, smaller patches, and more skip-connections require more computing resources.The design uses convolutional feature maps to encode patches, transformer self-attention for global connections, and retained bottom upsampling in the decoder.Source: §1 · p. 2
2. RELATED WORKS
Related work describes convolutional U-shaped networks, CNN–transformer combinations, and transformer models for vision. It also notes that transformer pretraining can require substantial data, motivating the paper’s Claw U-Net-based hybrid design.
- CNNs and U-shaped networks form a major medical-segmentation backbone, with variants using architectural and convolutional modifications [5, 6, 10, 23–25].Examples include Resnet34-UNet, Attention-UNet, Dense-UNet, UNet++, deformable convolution, and deep convolution.Source: §2 · p. 2
- Prior work combines self-attention or transformers with CNNs to address long-range dependence, including inserting transformers into U-Net structures [13].The paper adopts Claw U-Net [4] as its framework and introduces a transformer to examine its effect on medical-image segmentation.Source: §2 · p. 2
- Transformers model long-term sequence features and have been applied to image tasks, but the text notes that transformer structures require substantial pretraining data compared with trainable U-Net structures on small datasets [20] [21] [28].The proposed design uses Claw U-Net as its skeleton, adds transformer encoding to convolutional feature maps, and combines encoded and upsampling features in the decoder.Source: §2 · p. 2
3. METHOD
TransClaw U-Net combines convolution and transformer encoding with bottom upsampling and decoding to perform segmentation. Self-attention targets global feature learning while the decoding path preserves detail.
3. METHOD
- Self-attention in the encoding path targets global feature learning, while the bottom-upsampling and decoding path maintains detailed information for segmentation.Source: §3 · p. 2
3.1. Overall structure of TransClaw U-Net
- The encoder, bottom upsampling, and decoder are linked by skip connections; upsampling restores the image to its initial size.Source: §3.1 · pp. 2–3
3.2. Transformer in TransClaw U-Net
- Patch vectors form an N × P² sequence for transformer blocks; dividing attention dimensions keeps computational cost not much different from single-head attention.Source: §3.2 · p. 4
4. EXPERIMENTS
Experiments evaluate TransClaw U-Net on the Synapse multi-organ CT dataset against other models and across input-size, skip-connection, and patch-size ablations. The model leads the reported comparison, while the ablations expose trade-offs involving segmentation performance and computational resources.
4.1. Datasets
- The Synapse evaluation uses 30 abdominal CT cases, with 18 cases for training and 12 for testing, and assesses eight organs using DSC and HD.The dataset contains 3,779 axial images.Source: §4.1 · p. 4
4.2. Implementation Details
- Experiments use 224 × 224 inputs, batch size 24, and 150 training epochs, with SGD and cross-entropy loss; the best validation-set model is selected.All experiments use the same parameter settings for fair comparison.Source: §4.2 · p. 4
4.3. Comparison with other models on Synapse dataset
- TransClaw U-Net leads the Synapse comparison with DSC 78.09% and HD 26.38%, improving over TransUNet by 0.6% DSC and 5.3% HD and leading on three of eight organs.The other compared networks have DSC below 77.5% and HD above 31.5.Source: §4.3 · p. 5
- TransClaw U-Net shows better organ-boundary segmentation than TransUNet, especially between small-area organs; Attention-UNet over-segments and U-Net is inaccurate.The authors attribute TransClaw U-Net’s performance to Claw U-Net’s detail preservation and the transformer’s global-context learning.Source: §4.3 · p. 5, Figure 2 · p. 5
4.4. Ablation Experiments
- Increasing input resolution from 224 × 224 to 512 × 512 significantly raises DSC, but requires more computation and training time; the authors adopt 224 × 224.At unchanged patch size, larger inputs also lengthen the transformer sequence.Source: §4.4 · pp. 5–6
- Reducing skip-connections worsens segmentation; removing them drops DSC by 10.8% for Arota and 10.16% for Pancreas.The authors describe skip-connections as combining encoding, bottom upsampling, and decoding parts.Source: §4.4 · p. 6
- With 16×16 patches, DSC is 78.09%, compared with 77.27% for 24×24 patches; larger patches shorten the transformer sequence, while smaller patches make learned parameters grow rapidly and occupy computing resources.Source: §4.4 · p. 6
5. CONCLUSION
TransClaw U-Net combines CNN convolution with transformer mechanisms in the encoding part and retains upsampling in decoding. The paper reports strong performance on the Synapse multi-organ CT dataset and generalization in ablation experiments.
5. CONCLUSION
- TransClaw U-Net achieves excellent performance on the Synapse multi-organ CT dataset, while ablation experiments show excellent generalization performance.The conclusion reports these outcomes without giving metric values here.Source: §5 · p. 6
- The encoder combines CNN convolution with transformer self-attention to obtain global context and address convolution’s limitations in capturing it.The decoder retains the upsampling structure to improve medical-image segmentation accuracy.Source: §5 · p. 6
- Fig. 3 compares performance across different numbers of skip-connections.Source: Figure 3 · p. 7