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Can large language models provide useful feedback on research papers? A large-scale empirical analysis

Weixin Liang, Yuhui Zhang, Hancheng Cao, Binglu Wang, Daisy Ding, Xinyu Yang, Kailas Vodrahalli, Siyu He, Daniel Smith, Yian Yin, Daniel McFarland, James Zou

arXiv:2310.01783v1cs.LGcs.AIcs.CLcs.HC

TL;DR

Large-scale evidence on whether and how LLMs can provide scientific feedback has been limited. This paper evaluates a GPT-4 system that generates structured feedback from research-paper PDFs, finding substantial overlap with human feedback and positive user perceptions. Participants also identified difficulty producing specific, actionable feedback as a key limitation.

  • Problem

    Large-scale empirical evidence on whether and how LLMs can facilitate scientific feedback is lacking amid challenges to conventional feedback mechanisms.

    Source: Introduction · p. 2
  • Method

    The authors developed a GPT-4 pipeline that takes research-paper PDFs and produces structured feedback across key aspects of a review.

    Source: Introduction · p. 2
  • Results

    The evaluation found substantial overlap with human feedback, positive user perceptions of usefulness, and instances of novel points not covered by humans.

    Source: LLM could generate novel feedback not… · p. 6, Discussion · p. 7
  • Takeaways & Limitations

    LLM-generated feedback may be useful to researchers, but cannot substitute for specific, thoughtful feedback from domain experts.

    Source: Discussion · p. 7

    Participants identified difficulty generating specific, actionable feedback as a key limitation of the current system.

    Source: Limitations of LLM feedback · p. 6

Abstract

from arXiv · show

Expert feedback lays the foundation of rigorous research. However, the rapid growth of scholarly production and intricate knowledge specialization challenge the conventional scientific feedback mechanisms. High-quality peer reviews are increasingly difficult to obtain. Researchers who are more junior or from under-resourced settings have especially hard times getting timely feedback. With the breakthrough of large language models (LLM) such as GPT-4, there is growing interest in using LLMs to generate scientific feedback on research manuscripts. However, the utility of LLM-generated feedback has not been systematically studied. To address this gap, we created an automated pipeline using GPT-4 to provide comments on the full PDFs of scientific papers. We evaluated the quality of GPT-4's feedback through two large-scale studies. We first quantitatively compared GPT-4's generated feedback with human peer reviewer feedback in 15 Nature family journals (3,096 papers in total) and the ICLR machine learning conference (1,709 papers). The overlap in the points raised by GPT-4 and by human reviewers (average overlap 30.85% for Nature journals, 39.23% for ICLR) is comparable to the overlap between two human reviewers (average overlap 28.58% for Nature journals, 35.25% for ICLR). The overlap between GPT-4 and human reviewers is larger for the weaker papers. We then conducted a prospective user study with 308 researchers from 110 US institutions in the field of AI and computational biology to understand how researchers perceive feedback generated by our GPT-4 system on their own papers. Overall, more than half (57.4%) of the users found GPT-4 generated feedback helpful/very helpful and 82.4% found it more beneficial than feedback from at least some human reviewers. While our findings show that LLM-generated feedback can help researchers, we also identify several limitations.

Introduction

The introduction frames scientific feedback as essential but increasingly difficult to access, motivating a systematic evaluation of GPT-4 feedback through retrospective comparisons and a prospective researcher survey.

  • Scientific feedback supports discovery, but publication growth and specialization make timely, high-quality reviews difficult and deepen inequalities in access.The introduction notes that marginalized researchers, especially those at non-elite institutions or in resource-limited regions, face disproportionate challenges accessing valuable feedback.Source: Introduction · p. 2
  • The authors argue for scalable feedback mechanisms that could improve research and democratize access across the scientific community.Source: Introduction · p. 2
  • Despite LLM applications in paper screening, error identification, and checklist verification, large-scale evidence on their role in scientific feedback is lacking.Source: Introduction · p. 2
  • The study introduces a GPT-4 pipeline that turns paper PDFs into structured feedback on significance, acceptance and rejection reasons, and improvement suggestions.Source: Introduction · p. 2
  • Retrospective analyses compare GPT-4 feedback with reviews of post-2022 Nature-family and ICLR papers, examining overlap in key points and topic distributions.The ICLR dataset includes complete reviews for accepted and rejected papers; the post-2022 cutoff avoids testing on data within GPT-4's training period.Source: Introduction · p. 2
  • A prospective survey gathered feedback evaluations from 308 AI and computational-biology researchers at 110 US institutions.Researchers evaluated GPT-4 feedback on their own papers, including its helpfulness, reliability, limitations, and potential role in manuscript improvement.Source: Introduction · pp. 2–3

Results · Generating Scientific Feedback using LLM

The authors built a GPT-4 pipeline to generate scientific feedback on full-paper PDFs by parsing each paper and supplying a paper-specific prompt.

Generating Scientific Feedback using LLM

Retrospective Evaluation

Across Nature-family journals and ICLR, GPT-4’s feedback overlapped with individual human reviewers at rates comparable to human–human overlap. The overlap was higher for rejected papers and comments shared by multiple reviewers, while GPT-4 and humans differed in the aspects of feedback they emphasized.

Retrospective Evaluation

  • The retrospective evaluation covered 8,745 human comments on 3,096 accepted Nature-family papers and 6,505 comments on 1,709 ICLR papers; the matching pipeline’s extraction and matching F1 scores were 96.8% and 82.4%.The Nature dataset spanned 15 journals; ICLR included accepted and rejected papers.Source: Retrospective Evaluation · p. 3

LLM feedback significantly overlaps with human-generated feedback

  • GPT-4’s comment overlap with an individual reviewer was 30.85% in Nature journals versus 28.58% between human reviewers, and 39.23% versus 35.25% in ICLR.The comparison controlled for the number of comments.Source: LLM feedback significantly overlaps… · pp. 3–4
  • For ICLR, average GPT-4–human overlap rose from 30.63% for oral-accepted papers to 47.09% for rejected papers; human–human overlap rose from 23.54% to 43.80%.The oral and spotlight groups represent the top 5% and top 25% of accepted papers, respectively; overlap was also higher for spotlight papers than oral papers.Source: LLM feedback significantly overlaps… · p. 4

LLM could generate non-generic feedbacks.

LLM is consistent with humans on major comments

  • LLM comment identification rose with reviewer agreement: 11.39%, 20.67%, and 31.67% for 1, 2, and 3+ reviewers in Nature, and 15.39%, 26.21%, and 39.33% in ICLR.Comments raised by multiple reviewers were more likely to be echoed by the LLM.Source: LLM is consistent with humans on major… · p. 4
  • In Nature reviews, first-quarter comments had 21.23% overlap with LLM comments versus 16.74% for the second quarter; ICLR showed the same tendency for earlier comments to overlap more.Source: LLM is consistent with humans on major… · p. 5

LLM feedback emphasizes certain aspects more than humans

  • GPT-4 comments addressed research implications 7.27 times more often than humans, while humans were 10.69 times more likely to address novelty and 6.71 times more likely to request ablations.GPT-4 was 2.19 times more likely than humans to request experiments on more datasets, suggesting complementary emphases.Source: LLM feedback emphasizes certain… · p. 5

Prospective User Study and Survey

An opt-in survey of 308 researchers at 110 US institutions found that many viewed GPT-4 feedback as helpful and aligned with their expectations. Participants also reported overlooked perspectives, while identifying limits in the feedback’s specificity and actionability.

Prospective User Study and Survey

  • More than 70% perceived at least partial alignment with their expectations, while 32.9% rated the feedback as more specific than some but less specific than many peer reviewers.Additionally, 35% considered alignment considerable or substantial; 17.3% rated specificity about equal to peer reviewers and 14% higher than many peer reviewers.Source: Prospective User Study and Survey · p. 5

Researchers find LLM feedback helpful

  • A majority—over 50.3%—found the LLM feedback helpful and 7.1% very helpful; compared with human feedback, 41.9% rated it less helpful than many but more helpful than some.Additionally, 17.5% considered it inferior to human feedback, 20.1% about as helpful, and 20.4% more helpful.Source: Researchers find LLM feedback helpful · p. 5
  • 50.5% were willing to reuse the system, and participants across educational and research-experience groups reported similar helpfulness and alignment.Participants also expressed optimism about improving human feedback and saw authors as more likely to benefit than reviewers or area chairs.Source: Researchers find LLM feedback helpful · p. 6

LLM could generate novel feedback not mentioned by humans.

  • 65.3% thought LLM feedback offered perspectives overlooked or underemphasized by humans.Participants described it as identifying limitations and suggestions, including visualization and data privacy issues, that human reviewers had missed.Source: LLM could generate novel feedback not… · p. 6

Limitations of LLM feedback

  • Participants identified insufficiently specific and actionable feedback as a key limitation, including a lack of domain-specific technical critique.They suggested prompting for concrete advice, such as specific missing work or experiments; some found the feedback more focused on testing regimes and presentation than ML details, while still useful for polishing papers.Source: Limitations of LLM feedback · p. 6

Discussion

The discussion finds that LLM-generated feedback can be a useful resource for improving manuscripts, but it cannot replace expert human evaluation. It emphasizes responsible use and notes limitations in the system, study coverage, and visual understanding.

Discussion

  • Researchers often found the feedback useful, and it sometimes raised points that human reviewers had not covered.The authors suggest it could support timely self-checking and may be especially helpful to researchers with limited access to quality feedback.Source: Discussion · p. 7
  • Expert human feedback remains essential because the system can favor certain suggestions or feel generic, and cannot replace thoughtful domain-expert review.The authors note that some participants also described human reviews as generic.Source: Discussion · p. 7
  • LLM feedback should help authors identify improvements before submission, not replace reviewers’ independent reading and assessment.The authors warn that generating reviews without thoroughly reading manuscripts would undermine rigorous evaluation.Source: Discussion · p. 7
  • The study offers a preliminary prototype for exploring how responsibly deployed LLMs might change research, collaboration, and evaluation practices.The discussion situates this possibility within broader conversations about LLMs and generative AI’s potential effects on productivity, creativity, and scientific discovery.Source: Discussion · p. 7
  • The results reflect one GPT-4, zero-shot pipeline and should be read as a lower bound, while the evaluation covers top English-language venues and a self-selected user sample.The authors propose exploring other models, fine-tuning, prompt engineering, and tools such as fact-checking or algorithm-analysis APIs; the current GPT-4 system also cannot interpret figures, graphs, or tables.Source: Discussion · pp. 7–8
  • Future work could test whether LLM feedback detects and corrects different kinds of errors, assess false positives and negatives, and evaluate papers in other languages.The authors specifically propose testing typos, data-analysis mistakes, and mathematical-equation errors, as well as manuscripts by authors whose first language is not English.Source: Discussion · p. 8

Methods

The methods combine retrospective paper-review datasets, GPT-4 feedback generation and comment-overlap analyses with comment characterization and a prospective researcher survey.

Overview of the Nature Family Journals Dataset

Overview of the ICLR Dataset

  • The ICLR dataset included 1,709 papers and 6,506 reviews from 2022 and 2023, sampled across oral, spotlight, poster, rejected, and withdrawn outcomes.The sampling was stratified by outcome and year.Source: Overview of the ICLR Dataset · p. 8

Generating Scientific Feedbacks using LLM

  • The pipeline parsed paper PDFs with ScienceBeam and gave GPT-4 the first 6,500 extracted tokens to generate a single-pass outline covering four reviewer-feedback sections.The sections were significance and novelty, potential reasons for acceptance, potential reasons for rejection, and suggestions for improvement.Source: Generating Scientific Feedbacks using… · pp. 8–9

Retrospective Extraction and Matching of Comments from Scientific Feedback

  • The matching pipeline extracted criticism points from LLM and human feedback, then used GPT-4 to identify semantic matches, retaining only matches rated 7 or higher.GPT-4 rated match similarity from 5 to 10; matches rated 5 or 6 were excluded from subsequent analyses.Source: Retrospective Extraction and Matching… · p. 9
  • Extraction achieved F1 0.968 (precision 0.977, recall 0.960), while semantic matching achieved F1 0.824 (precision 0.777, recall 0.878).For semantic matching, annotators had 89.8% pairwise agreement and an F1 score of 88.7% against majority consensus.Source: Retrospective Extraction and Matching… · p. 9

Evaluating Specificity of LLM Feedback through Review Shuffling

  • The shuffling test paired LLM feedback with a different paper’s human feedback from the same Nature journal and category or ICLR year to test whether overlap fell.The test evaluated the null hypothesis that generic LLM feedback would show little drop in overlap after shuffling.Source: Evaluating Specificity of LLM Feedback… · pp. 9–10

Overlap Metrics for Retrospective Evaluations and Control

  • The retrospective analysis measured comment hit rate for GPT-4–human and human–human pairs, controlled human comments to GPT-4’s count, and found comparable overlap across alternative metrics.The analysis also evaluated the Szymkiewicz–Simpson overlap coefficient, Jaccard index, and Sørensen–Dice coefficient.Source: Overlap Metrics for Retrospective… · p. 10

Characterizing the comment aspects in human and LLM feedback

  • The ICLR aspect analysis annotated LLM and human comments against an 11-aspect schema on 500 sampled papers, while prospective participants uploaded post-September 2021 PDFs and completed a survey.The 15–20-minute survey covered author backgrounds and evaluations of LLM reviews; participants were recruited through institute mailing lists and author outreach, compensated $20, and the study had Stanford IRB approval.Source: Characterizing the comment aspects in… · pp. 10–11

Supplementary Information

The supplementary material situates the study among earlier AI-assisted scientific-feedback work, emphasizes its larger-scale quantitative assessment, and reports human verification of the retrospective matching pipeline.

Additional Related Work

  • Earlier work explored AI-assisted peer review, including small-scale studies of ChatGPT and GPT-4 and analyses of paper errors, quality, and gender disparities [60] [26] [25] [61].Other tools summarized papers, detected inaccurately reported p-values, rectified citation errors, and identified fairness disparities [56] [57] [58] [59].Source: Additional Related Work · p. 19
  • The study combines 3,096 Nature-family papers, 1,709 ICLR papers, and 308 prospective-study responses from 110 US institutions in a systematic quantitative assessment.The assessment includes overlap analyses and human-evaluation metrics to examine the promise and limitations of LLM scientific feedback.Source: Additional Related Work · p. 19

F1 Score 0.968

  • 2,634 true positives, 110 false negatives, and 63 false positives were recorded in human verification of the extractive summarization stage.The supplementary table also reports high accuracy for semantic matching after annotators reviewed 12,035 comment pairs.Source: Additional Related Work · p. 22, Table 3 · p. 22
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