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Learning to Reason Like a Cytopathologist:Clinically Grounded Multiscale Evidential Learning for Cervical Cytology

Ajeet Kumar Singh, Nehal Mishra, Anurag Tripathi, Santanu Chaudhury, Dorien Herremans

arXiv:2610.29665v1cs.CV

TL;DR

Cervical cytology includes morphologically ambiguous categories, and conventional classifiers do not explicitly represent conflicting or insufficient evidence. This paper combines ordinally trained, independent spatial views through calibrated Dempster–Shafer fusion and routes cases using the fused belief state. Across RIVA and CRIC Cervix, the framework preserves uncertainty associated with diagnostic difficulty, with its fusion advantage clearest when views disagree.

  • Problem

    Cervical cytology includes overlapping morphologies and equivocal categories, while hard predictions and early multiscale fusion do not explicitly represent insufficient evidence or preserve potentially informative disagreement.

    Source: §1 · p. 2
  • Method

    The framework independently encodes three spatial views, trains with clinically grounded ordinal soft anchors, and reliability-discounts calibrated evidence before Dempster–Shafer fusion and routing.

    Source: §1 · p. 2, §3.2 · p. 5
  • Results

    Across RIVA and CRIC Cervix, DST improves over individual scales and alternative fusion strategies, with its strongest advantage under inter-scale conflict.

    Source: §7 · p. 8
  • Takeaways & Limitations

    Uncertainty concentrates on diagnostically difficult cases, making the uncertain pool a natural target for further review.

    Source: §6 · p. 7

    On CRIC, the uncertain pool contains only 16 test samples (0.9%) with limited class representation, so class-level routing statistics are directional.

    Source: §8 · p. 9

Abstract

from arXiv · show

Cervical cytology presents a fundamentally ambiguous diagnostic landscape, where equivocal categories such as Atypical Squamous Cells of Undetermined Significance (ASC-US) occupy a morphological grey zone that is definitional. For clinical decision support, the goal extends beyond assigning a definitive label to every sample: cases must also be distinguished by whether the available evidence supports a confident decision or warrants further consideration, a distinction conventional classification models are not designed to explicitly represent. We propose a multiscale evidential framework that models cervical cytology along an ordinal disease continuum using clinically grounded soft anchors, representing progression from benign reactive changes to precancerous lesions and malignancy. Three biologically motivated spatial contexts--nuclear morphology, cytoplasmic characteristics, and neighbourhood cellular architecture--are independently encoded using a shared frozen DINOv2 backbone, preserving inter-scale disagreement that early fusion may obscure. Calibrated predictions are transformed into Dempster--Shafer belief masses and fused with reliability discounting, allowing conflicting evidence and insufficient support to remain explicitly uncommitted rather than forcing a decision. The fused belief state drives interpretable routing that separates confidently classified cases from those with irreducible evidential insufficiency, enabling clinically meaningful triage. Across two independent publicly available conventional cytology datasets, RIVA and CRIC Cervix, the framework generalises consistently, with uncertainty strongly associated with diagnostic difficulty: incorrect predictions carry 1.94x-4.13x higher uncertainty than correct ones.

1. Introduction

Bethesda categories follow a clinical severity continuum, but some morphologies remain difficult to distinguish. The framework represents ordinal relationships and ambiguity while preserving evidence from separate spatial scales for uncertainty-aware decisions.

  • INFL and ASC-US can overlap morphologically, while benign ENDO cells can resemble HSIL, so plausible predictions need not be definitive.Source: §1 · p. 2
  • Conventional multiscale fusion can suppress disagreement between spatial views, and hard predictions cannot explicitly represent conflicting or insufficient evidence.Source: §1 · p. 2
  • The framework uses ordinal soft anchors, independent scale-specific predictions, and Dempster–Shafer fusion to retain uncertainty and route cases for review.Evaluation on RIVA and CRIC Cervix finds greater uncertainty for incorrect predictions and high uncertainty concentrated around equivocal categories.Source: §1 · p. 2

2. Related Work

Prior work reports competitive isolated-cell classification but varies in labels, datasets, and evaluation, while multiscale predictions have generally served classification rather than explicit evidence characterization. This work combines spatial views as separate evidence sources for ambiguity-aware classification and routing.

  • Studies of isolated-cell cervical cytology differ in diagnostic groupings, datasets, and evaluation protocols, complicating direct comparison of reported results.Source: §2 · p. 2
  • Multiscale architectures use complementary morphology, but prior predictions typically improve classification without explicitly characterizing evidence from each spatial view.A review of 77 studies identifies limited generalizability and insufficient representation of real-world cytological complexity as persistent challenges.Source: §2 · p. 2
  • DST represents support for competing hypotheses alongside uncommitted evidence, but its use to fuse complementary spatial predictions in cervical cytology remains unexplored.Source: §2 · p. 2
  • The work retains separate nuclear, cellular, and neighbourhood evidence until late fusion, allowing agreement, conflict, and insufficient evidence to affect the final decision.Source: §2 · p. 2

3. Method

The method keeps three spatial views independent until calibrated evidence is fused, combining ordinal supervision with reliability-discounted Dempster–Shafer reasoning. The resulting belief state supports routing that distinguishes insufficient evidence from confident decisions.

3. Method

  • Three nucleus-centred crops of 100, 200, and 400 pixels represent nuclear, cytoplasmic, and neighbourhood contexts across both datasets.The 100-pixel crop follows RIVA's annotation convention; the larger crops add context.Source: §3 · p. 2

3.1. Multiscale Feature Extraction and Ordinal Prediction

  • Independent scale-specific heads use eight clinically grounded soft anchors to retain ordinal relationships and keep ASC-US between benign and lesion regions.Anchor spacing represents ordinal positions, not raw clinical risk probabilities.Source: §3.1 · p. 3, Table 2 · p. 4

3.2. Calibrated Predictions and Evidential Fusion

  • Per-scale calibrated predictions are normalized around dataset-specific decision thresholds before being converted into evidence.Evidence strength increases with distance from the decision boundary; predictions close to it provide little committed evidence.Source: §3.2 · p. 4
  • Each scale assigns mass to benign, lesion, or uncertainty; reliability discounting transfers less reliable sources’ residual mass to uncertainty.Source: §3.2 · p. 4
  • Sequential Dempster–Shafer fusion combines the three discounted sources, with conflict contributing to K and insufficient evidence remaining in mU.The resulting fused belief state is used by the routing policy.Source: §3.2 · p. 5

3.3. Evidence-Based Routing

  • The routing policy treats mU > 0.50 as an uncertain pool, distinguishing scale agreement from disagreement rather than treating uncertainty as a diagnosis.When scale votes disagree but mU is low, fused belief can resolve the disagreement; CRIC additionally uses a dataset-specific NILM vote filter.Source: §3.3 · p. 5

4. Experiments

The experiments evaluate the framework on two cytology datasets, report routing and uncertainty metrics, and specify the training setup.

4.1. Datasets

  • RIVA covers all eight TBS categories; CRIC Cervix covers six and tests cross-dataset generalization under different scanning, staining, and demographic conditions.RIVA has 10,613/2,654/2,682 train/validation/test cells; CRIC has 8,073/1,730/1,731, with only 91 ASC-US cells in each of its validation and test splits.Source: §4.1 · p. 5

4.2. Metrics

  • Macro-F1 is primary; lesion-F1 and routing accuracy assess binary routing, while ROC-AUC, PR-AUC, uncertainty ratio, and confidence-threshold metrics characterize fused output and uncertainty.UR > 1 indicates greater mean uncertainty for incorrect predictions; high-confidence samples have mU ≤0.40, the uncertain pool has mU >0.50, and silent wrong is the fraction of low-uncertainty samples routed to the incorrect binary branch.Source: §4.2 · pp. 5–6

4.3. Implementation Details

  • Each scale-specific MLP is trained independently for 20 epochs with AdamW, learning rate 10−3, weight decay 10−4, and a frozen DINOv2 ViT-B/14 feature backbone.The checkpoint is selected by validation macro-F1 computed from ordinally supervised predictions.Source: §4.3 · p. 6

5. Results

DST performs best among the tested fusion strategies on both datasets, with its clearest advantage when spatial views disagree or evidence is insufficient. Uncertainty varies with diagnostic ambiguity, while the evidential formulation transfers across datasets with validation-adapted calibration and thresholds.

5.1. Classification and Fusion Results

  • DST provides the strongest fusion performance on both datasets, with its clearest separation when spatial views disagree or evidence is insufficient.The comparison holds the calibrated predictions and scale-specific classifiers fixed, isolating the fusion strategy.Source: §5.1 · p. 6, Table 5 · p. 7

5.2. Uncertainty and Clinical Ambiguity

  • NILM and SCC are routed more reliably with lower uncertainty than categories near the benign–lesion boundary.Fused lesion-transition scores retain ordinal progression across datasets, with NILM and SCC near opposite ends and ASC-US and LSIL in broader transitional regions.Source: §5.2 · p. 6, Figure 2 · p. 7
  • Incorrect predictions tend to carry more uncertainty overall on both datasets, but correctly routed ASC-US samples can remain more uncertain than incorrect ones.ENDO is the main failure mode on RIVA, with poor routing accuracy and a high silent-wrong rate.Source: §5.2 · p. 6

5.3. Ablation, Sensitivity, and Cross-Dataset Stability

  • The core evidential formulation transfers unchanged, while calibration and scale-specific thresholds adapt to each dataset’s validation distribution.The CRIC NILM filter is an additional refinement for obtaining a purer Genuine Uncertain pool, not a requirement for operation.Source: §5.3 · p. 6
  • The ASC-US anchor value 0.60 retains stable behaviour across both datasets; reliability settings alter spatial-source influence, while λ and mhigh_U mainly affect uncertain-pool size and composition.Changing the order of sequential DST combination produces no differences on either dataset, consistent with Dempster’s rule being commutative and associative.Source: §5.3 · p. 7

6. Discussion

Uncertainty mass tracks diagnostic difficulty: high-confidence samples outperform the overall average, while uncertain samples underperform it. ASC-US can remain uncertain even when correctly predicted, and Figure 3 illustrates the framework’s routing categories.

Uncertainty as a first-class output

  • High-confidence samples outperform the overall average, while uncertain samples underperform it, concentrating uncertainty on diagnostically difficult cases.The uncertain pool is identified as a natural target for further review.Source: §6 · p. 7, Table 8 · p. 8

Biology-driven uncertainty structure

  • Correctly predicted ASC-US samples remain more uncertain than confidently misclassified ones, consistent with genuine boundary ambiguity.The passage attributes this pattern to the interaction of soft ordinal targets and DST fusion.Source: §6 · pp. 7–8

Representative routing cases

  • Figure 3 illustrates five routing categories, including cases where DST resolves disagreement and cases with insufficient evidence.Each row shows a test sample’s scale-specific lesion probabilities and votes, fused evidence, and routing action.Source: Figure 3 · p. 8

Routing and design summaries

  • Table 6 reports per-class routing accuracy, silent-wrong rate, mean uncertainty, and the uncertainty ratio between incorrect and correct predictions.Table 7 summarizes the cross-dataset status of principal design choices.Source: Table 6 · p. 8, Table 7 · p. 8

Uncertainty-stratified results

  • The uncertainty-stratified results cover 2,682/1,731 total samples, 2,276/1,649 high-confidence samples, and 275/16 uncertain samples for RIVA/CRIC, respectively.The CRIC uncertain pool is notably small relative to its high-confidence pool.Source: §6 · p. 8

7. Conclusion

The paper concludes that multiscale Dempster–Shafer fusion improves cervical cytology routing while preserving ordinal category information and representing uncertainty. Across RIVA and CRIC Cervix, incorrect predictions carry higher uncertainty, particularly near ambiguous class boundaries.

7. Conclusion

  • Across RIVA and CRIC Cervix, Dempster–Shafer fusion improves over individual scales and alternative fusion strategies, especially under inter-scale conflict.The fused evidence preserves Bethesda-category ordinal progression, while incorrect predictions show substantially higher uncertainty, particularly around ambiguous boundaries.Source: §7 · p. 8

8. Limitations

The binary benign–lesion routing frame has a documented difficulty with ENDO, whose benign morphology can resemble HSIL. CRIC’s uncertain pool is very small, and its dataset-specific NILM vote-filter threshold must be determined empirically for new datasets.

ENDO routing

  • RIVA ENDO routing accuracy is 0.222, with a 46.7% silent-wrong rate and UR=0.42, so incorrect predictions carry less uncertainty than correct ones.ENDO’s benign morphology can resemble HSIL, exposing a limitation of the binary evidential frame; a richer hypothesis space is proposed as future work.Source: §8 · pp. 8–9

CRIC uncertain pool

  • CRIC’s genuine uncertain pool contains only 16 test samples (0.9%), with limited class representation, making class-level routing statistics directional.The CRIC-specific NILM vote-filter threshold must be determined empirically for new datasets.Source: §8 · p. 9
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